BioInformatics - MEDevel.com: Open-source for Healthcare, and Education

Statistics

StatsPro: A Statistical Tool for Detecting Differential Expression in Label-Free Quantitative Proteomics

StatsPro is a comprehensive tool designed to help scientists detect differentially expressed proteins in label-free quantitative proteomics experiments. The tool integrates 12 common statistical methods and 6 P-value combination strategies, allowing users to systematically evaluate the performance of these methods. By offering three evaluation criteria, StatsPro provides a detailed and

BioInformatics

Revolutionizing Healthcare: The Impact of Python in Bioinformatics, Medicine, and AI Integration, 18 Libraries and Projects

The Python programming language plays a significant role in data science, AI, bioinformatics, web development, desktop applications, and game development. Python has gained popularity as an easy-to-learn language with a gentle learning curve and powerful frameworks. This has made it a favorite for university student projects and a common first

BioInformatics

Introducing Ascle: A State-of-the-Art Framework for Efficient Natural Language Processing for Medical Text Generation

As Natural Language Processing (NLP) evolves, researchers and developers continually seek new frameworks to boost efficiency, speed, and performance. Ascle, an innovative NLP framework developed by Yale LILY (Language, Information, and Learning at Yale), stands out as one of the most promising new entries in this field. This Free open-source

research

MedCodes: Streamlining Clinical Data Standardization and Interpretation in Python

MedCodes is a powerful Python package that simplifies the standardization and interpretation of clinical data. Whether you're working with drug classifications or extracting meaningful medical insights, MedCodes provides the tools to navigate complex medical coding systems. A key feature of MedCodes is its integration with RxNorm, a system

Chemistry

MolView: The Free 3D Molecular Viewer for Chemists and Educators

MolView is a free interactive web-based platform that lets users visualize and analyze molecular structures in 2D and 3D. This accessible tool serves chemists, educators, and students by simplifying the exploration of chemical compounds and biological macromolecules. With its user-friendly interface and robust features, MolView deepens users' understanding of

BioInformatics

ProTéStAR: Accelerating Protein Structural Annotation for Bioinformatics

ProTéStAR is a comprehensive platform that helps bioinformaticians and researchers quickly generate structural annotations for proteins. As the need for protein structure prediction grows in fields like drug development and molecular biology, ProTéStAR offers an efficient, automated approach to analyzing and annotating large datasets. The tool uses existing databases, machine

Pathology

18 Free and Open-source Whole Slide Imaging Pathology Projects and Libraries, a Comprehensive Guide for Bioengineers and Bio Data Scientists (2024)

Digital pathology is a cutting-edge field that transforms traditional pathology by digitizing glass slides into high-resolution whole slide images (WSIs). These WSIs capture the entire tissue sample on a slide, enabling detailed analysis and diagnostics through digital means. By using advanced imaging techniques, digital pathology allows pathologists to view, analyze,

science

iCn3D Structure Viewer - Free Self-hosted Protein Structure Viewer

"I see in 3D" (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode using NodeJS scripts based on the npm package icn3d. iCn3D synchronizes the display of 3D structure, 2D interaction, and 1D sequences and

medicine

Technology And SIRVA Settlements: The Role Of Health Informatics

The advent of technology has transformed various sectors, including the legal landscape. One area that's particularly witnessing a significant shift is the handling of SIRVA (Shoulder Injury Related to Vaccine Administration) cases. These cases involve individuals who have experienced shoulder injuries due to the improper administration of vaccines.

science

Bio7: A Free IDE for Ecological Modelling

The application Bio7 is a free and open-source integrated development environment for ecological modeling, scientific image analysis and statistical analysis It contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and

tools

6 Coronavirus Outbreak Monitors and Trackers: Stay updated

The Coronavirus (2019-nCoV) outbreak in China is becoming a global crisis, There are currently 2,091 confirmed cases worldwide, including 56 fatalities. There are confirmed cases in the USA, France, Nepal, Canada, Australia, Thailand, South Korea, Japan, Vietnam, and Saudi Arabia. We recommend watching this video as a brief introduction

Pathology

Open Microscopy Environment (OME): Digital Pathology Redefined with Open source

OME (Open Microscopy Environment) is an open-source initiative aiming to produce open-source software and format standards for microscopy data. The project is started by researchers from the University of Dundee, later it gathered the attention and support from researchers, developers, & scientists from all over the world, from universities, institutes,

Open-source

15 Open-source Free Web-based 3D Molecular and Protein Modelling Software

What is WebGL? Nowadays WebGL is a trending technology as it allows developers to create complex 3D interactive graphics, games using modern browsers as a client, without the need to install additional plugins, extensions, or software. WebGL allows the browser to work directly with the GPU (graphics processing unit). There

Visualization

15 WebGL Medical Visualization Projects

WebGL is an emerging web technology, it's used nowadays to create games, interactive 3D products showcase, medical & scientific visualizations, geospatial data visualization. There are several frameworks, libraries and graphics/ games engines aiming for web developers to create interactive 3D visualization/ graphics that works directly from the browser

DICOM and Medical Radiology

Gimias: Open source Framework for building Medical Imaging & Medical Simulation applications for Windows and Linux

Gimias is an open source framework for medical imaging analysis and simulation, The term "framework" indicates its core users, developers, and researchers, as it can be used to develop and generate medical imaging applications as it consists from several utilities to make the production easier. It has been

Genetics

Genotify: An open source gene search tool for researchers

Genotify is a free open source cross-platform gene annotation software, which is a repeated task for gene and molecular biology researchers. There is no better description for Genoitify in fewer words than Genotify's paper at The Journal of Open Source Software " Genotify: Fast, lightweight gene lookup and